On the performance of the Kohn–Sham orbital approach in the calculation of electron transfer parameters. The three state model

文献信息

发布日期 2014-07-01
DOI 10.1039/C4CP02117G
影响因子 3.676
作者

S. Simon, L. Blancafort


查看原文

摘要

We have tested the performance of the Kohn–Sham orbital approach to obtain the electronic coupling and the energetics for hole transfer (HT) in the guanine–indole pair, using a three-state model. The parameters are derived from the simple DFT calculations with 10 different functionals, and compared with benchmark MS-CASPT2 calculations. The guanine–indole pair is a simple model for HT in DNA–protein complexes, which has been postulated as a protection mechanism for DNA against oxidative damage. In this pair, the first excited state of the indole radical cation has low energy (less than 0.3 eV relative to the ground state of the cation), which requires the application of very accurate quantum chemical methods and the invocation of a 3-state model. The Kohn–Sham orbital approach has been tested on six π stacked and three T-shaped conformers. It has been shown to provide quite accurate results for all ten tested functionals, compared to the reference MS-CASPT2 values. The best performance has been found for the long-range corrected CAM-B3LYP functional. Our results suggest that the Kohn–Sham orbital method can be used to estimate the excited state properties of radical cation systems studied using transient spectroscopy. Because of its accuracy and its low computational cost, the approach allows one to calculate relatively large models and to account for the effects of conformational dynamics on HT between DNA and a protein environment.

相关文献

Divergent synthesis of 5′,7′-difluorinated dihydroxanthene-hemicyanine fused near-infrared fluorophores

Shasha Zheng, Gu Lingyue, Michelle Jui Hsien Ong, Denis Jacquemin, Jean-Alexandre Richard, Rajavel Srinivasan

2019-04-10 Paper

DOI: 10.1039/C9OB00568D

Synthesis of vicinal dideoxy-difluorinated galactoses

Julien Malassis, Jean-Baptiste Vendeville, Qui-Hien Nguyen, Marie Boujon, Quentin Gaignard-Gaillard, Mark Light, Bruno Linclau

2019-05-16 Paper

DOI: 10.1039/C9OB00707E

Front cover

Cover

DOI: 10.1039/C9OB90093D

Structural characteristics requisite for the ligand-based selective detection of i-motif DNA

Sagar Satpathi, Subrahmanyam Sappati, Konoya Das

2019-05-08 Paper

DOI: 10.1039/C9OB01020C

Total synthesis of spiromastilactone A

Pauline Chaumont-Olive, Jacques Maddaluno, Anne Harrison-Marchand

2019-03-21 Paper

DOI: 10.1039/C9OB00547A

Organoboron synthesis via ring opening coupling reactions

Riccardo Gava, Elena Fernández

2019-06-03 Review Article

DOI: 10.1039/C9OB00989B

A novel chemiluminescent probe for hydrazine detection in water and HeLa cells

Jiang Liu, Jianze Jiang, Yandong Dou, Fangfang Zhang, Xin Liu, Jiaojiao Qu, Qing Zhu

2019-07-10 Communication

DOI: 10.1039/C9OB01407A

Back cover

Cover

DOI: 10.1039/C9OB90087J

您可能还喜欢

化合物问答

2-Bromo-4-chloro-1-(difluoromethyl)benzene(CAS号:1261476-50-9)的市场或研究趋势如何?

随着环保要求的提高和安全意识的增强,该化合物的研究和应用趋势正逐渐转向更安全、更环境友好的替代品。市场关注点主要集中在开发新型合成方法和绿色化学路径,以减少有害...

1261476-50-92-Bromo-4-chloro-1-(...
化合物问答

如何处理含有2,9 - 二苯基-1,10 - 菲罗啉(CAS号:25677-69-4)的废料?

处理含有2,9 - 二苯基 - 1,10 - 菲罗啉的废料时,应先将其收集在适当的容器中,避免与其他化学品混合。随后,可以通过水解或氧化等方法进行处理,直至达到...

25677-69-42,9-Diphenyl-1,10-ph...
化合物问答

处理(6-氯-吡嗪-3-基)-(4-乙基-哌嗪-1-基)-甲酮(CAS号:1178836-15-1)时应注意哪些实验室安全事项?

处理(6-氯-吡嗪-3-基)-(4-乙基-哌嗪-1-基)-甲酮时,应穿戴适当的个人防护装备(PPE),包括手套、护目镜和实验室外套。在通风橱中操作以确保良好的通...

1178836-15-1(6-Chloro-3-pyridazi...
化合物问答

处理(R)-2-氯-1-(2,4-二氯苯基)乙醇(CAS号:114446-57-0)时应注意哪些实验室安全事项?

在处理(R)-2-氯-1-(2,4-二氯苯基)乙醇时,应佩戴防护眼镜、实验室外套和手套,确保通风橱开启以减少接触和吸入的风险。避免直接接触皮肤和眼睛。处理过程中...

114446-57-0(1R)-2-Chloro-1-(2,4...
化合物问答

在合成中是否有3-氯-6-(3-氯哌啶-1-基)吡嗪(CAS号:1185310-37-5)的替代品?

可考虑使用类似结构的化合物作为替代品,如3-氯-6-(哌啶-1-基)吡嗪或3-氯-6-(2-氯哌啶-1-基)吡嗪,这些化合物在结构上与目标化合物相似,可能具有相...

1185310-37-53-Chloro-6-(3-chloro...
化合物问答

苯并三氮唑-5-甲酸乙酯(CAS号:73605-91-1)通常如何合成?

该化合物可以通过乙酸乙酯与5-溴-1H-苯并三氮唑的反应合成,通常在无水条件下进行。合成过程中,需要使用适当的溶剂如乙酸乙酯,并在适当的温度下反应。该反应具有较...

73605-91-1Ethyl 1H-benzotriazo...
化合物问答

什么是一水硫酸镁(CAS号:14168-73-1)?

一水硫酸镁是一种无机化合物,化学式为MgSO₄·H₂O,CAS号为14168-73-1。它由镁离子、硫酸根离子和一个结晶水分子组成,通常呈现为白色粉末或颗粒状固...

14168-73-1Magnesium sulfate hy...
化合物问答

氘代-1,3-二氯-2-丙醇(CAS号:1173020-20-6)应用于哪些行业?

氘代-1,3-二氯-2-丙醇主要应用于医药和有机合成领域,作为研究化合物的氘代替代品,用于标记和追踪反应过程。此外,在聚合物和半导体生产中也有一定的应用潜力。

1173020-20-61,3-Dichloro-2-(~2~H...
化合物问答

如何储存氰乙酸环己酯(CAS号:52688-11-6)?

氰乙酸环己酯应储存在阴凉、干燥、通风良好的环境中,远离火源和热源,防止阳光直射。储存容器应密封良好,避免与空气接触,防止发生不必要的反应。

52688-11-6Cyclohexyl cyanoacet...
化合物问答

2-碘-4-硝基苯胺(CAS号:6293-83-0)的市场或研究趋势如何?

目前,2-碘-4-硝基苯胺在医药和农药领域有一定的研究和应用,尤其是在开发新型药物和农药产品方面。然而,由于其潜在的环境和健康风险,行业正趋向于寻找更为安全和环...

6293-83-02-iodo-4-nitroanilin...

来源期刊

Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics
CiteScore: 5.5
自引率: 10.3%
年发文量: 3036

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.

推荐供应商

免责声明
本页面提供的学术期刊信息仅供参考和研究使用。我们与任何期刊出版商均无关联,也不处理投稿事宜。如有投稿相关咨询,请直接联系相关期刊出版商。
如发现页面信息有误,请发送邮件至 support@chemtradehub.com 联系我们。我们将及时核实并处理您的问题。