How predictive could alchemical derivatives be?

文献信息

发布日期 2017-05-30
DOI 10.1039/C7CP02755A
影响因子 3.676
作者

Macarena Muñoz, Carlos Cárdenas


查看原文

摘要

The chemical space contains all possible compounds that can be imagined. Its size easily equals the number of fundamental particles in the observable universe. Rational design of compounds aims to find those sectors of the chemical space where compounds optimize a set of desired properties. Then, rational design demands tools to efficiently navigate the chemical space. Ab initio alchemical derivatives offer the possibility to navigate, without empiricism, the energy landscape through alchemical transformations. An alchemical transformation is any process, physical or fictitious, that connects to points in the chemical space. In this work, those transformations are constructed as a perturbative expansion of the energy with respect to perturbations in the stoichiometry. The response functions of that expansion are what is called alchemical derivatives. In this work we assess how effective alchemical derivatives are in predicting energy changes associated to changes in the composition. We do this by including in the expansion, for the first time, electrostatic, polarization and electron-transfer effects. The system we chose is one that challenges alchemical derivatives because none of these effects dominates its behavior. The transmutations studied here correspond to substitutional doping of Al13 with up to four atoms of Si, Al13−nSin. Two types of transformations are considered, those in which the number of electrons remains constant and those in which the number of electrons also changes. It is found that contrary to what has been reported before, polarization cannot be neglected. If polarization is not included, alchemical derivatives fail to predict the change of energy and the relative energy between isomers. For isoelectronic substitution of four or more atoms, the perturbative approach collapses because the strength of the perturbation becomes too strong to guarantee convergence of the series. It is shown, however, that if only one atom is mutated at a time, alchemical derivatives rank pretty well the isomers of Al13−nSin according to their energy. In the case of non-isoelectronic transformations, it is observed that the series rapidly diverges with increasing number of electrons. In this situation, it becomes more important to keep the degree of transmutation of the parent system small.

相关文献

Optimization and evaluation of networked single-wall carbon nanotubes as a NO2 gas sensing material

Isao Sasaki, Nobutsugu Minami, Annamalai Karthigeyan, Konstantin Iakoubovskii

2008-11-03 Paper

DOI: 10.1039/B813073F

Electrochemical impedance spectroscopy and surface plasmon resonance studies of DNA hybridization on gold/SiOx interfaces

Maël Manesse, Valerie Stambouli, Rabah Boukherroub

2008-07-01 Paper

DOI: 10.1039/B804825H

Gold nanoparticle-based immunoassay by using non-stripping chemiluminescence detection

Chun-Feng Duan, Yu-Qi Yu, Hua Cui

2008-07-28 Paper

DOI: 10.1039/B807163B

Genetic, genomic and physiological state studies on single-needle bio-electrosprayed human cells

Richard P. Hall, Caroline M. Ogilvie, Emma Aarons, Suwan N. Jayasinghe

2008-07-02 Communication

DOI: 10.1039/B806901H

Development of robust quantitative methods by near-infrared spectroscopy for rapid pharmaceutical determination of content uniformity in complex tablet matrix

Dong Xiang, Michele Konigsberger, Busolo Wabuyele, Karl Hornung, James Cheney

2009-03-31 Paper

DOI: 10.1039/B821836F

Targeting and detecting cancer cells using spontaneously formed multifunctional dendrimer-stabilized gold nanoparticles

Xiangyang Shi, Su He Wang, Mary E. Van Antwerp, Xisui Chen, James R. Baker, Jr

2009-04-17 Paper

DOI: 10.1039/B902199J

Renewable surface fluorescence sandwich immunoassay biosensor for rapid sensitive botulinum toxin detection in an automated fluidic format

Jay W. Grate, Marvin G. Warner, Richard M. Ozanich, Jr., Keith D. Miller, Heather A. Colburn, Brian Dockendorff, Kathryn C. Antolick, Norman C. Anheier Jr., Michael A. Lind, Jianlong Lou, James D. Marks, Cynthia J. Bruckner-Lea

2009-03-05 Paper

DOI: 10.1039/B900794F

Spatial metabolic fingerprinting using FT-IR spectroscopy: investigating abiotic stresses on Micrasterias hardyi

Soyab A. Patel, Felicity Currie, Nalin Thakker, Royston Goodacre

2008-10-21 Paper

DOI: 10.1039/B809441A

Ionic-liquid-based method to determine the degree of esterification in cellulose fibers

Pablo Domínguez de María, Alexandra Martinsson

2008-12-16 Paper

DOI: 10.1039/B815740E

您可能还喜欢

化合物问答

4,5-二甲基-2-硝基苯甲酸(CAS号:4315-14-4)的市场或研究趋势如何?

4,5-二甲基-2-硝基苯甲酸主要应用于制药、染料和农药等行业。由于其潜在的毒性,其市场趋势可能受到法规限制和环保考量的影响,推动了替代产品的研发。在研究领域,...

4315-14-44,5-Dimethyl-2-nitro...
化合物问答

处理直接黑22(CAS号:6473-13-8)时应注意哪些实验室安全事项?

处理直接黑22时应穿戴适当的个人防护装备(PPE),包括实验服、手套、护目镜和口罩。操作应在通风橱内进行,以避免吸入有害气体。如果发生泄漏,应立即清理,并使用大...

6473-13-82-Naphthalenesulfoni...
化合物问答

处理2,1,3-苯并噻二唑-4-基异氰酸酯(CAS号:342411-14-7)时应注意哪些实验室安全事项?

处理2,1,3-苯并噻二唑-4-基异氰酸酯时应注意以下安全事项:穿戴个人防护装备,如实验室外套、防护眼镜和手套;在通风橱中操作,确保良好的通风;保持实验室环境干...

342411-14-74-Isocyanato-2,1,3-b...
化合物问答

如何处理含有Δ-8,9-脱氢雌酮(CAS号:204077-66-7)的废料?

含有Δ-8,9-脱氢雌酮的废料需要进行适当的处理以确保环境和人体安全。首先,收集废液并存放于密封容器中,避免泄漏。其次,可以考虑将其转化为无害物质或通过专业处理...

204077-66-7Thioquinapiperifil d...
化合物问答

如何储存5-溴戊酸(CAS号:2067-33-6)?

5-溴戊酸应储存在阴凉、干燥、通风良好的环境中,避免阳光直射。建议在室温(约15-25°C)下保存,保持相对湿度低于60%。应使用密封的玻璃或塑料容器,并远离热...

2067-33-65-Bromopentanoic aci...
化合物问答

4-(甲基亚磺酰基)苯胺(CAS号:22865-62-9)应用于哪些行业?

4-(甲基亚磺酰基)苯胺在医药、聚合物和传感器等领域有一定的应用。在医药方面,它可以用作合成药物的中间体;在聚合物领域,可以作为合成特殊性能高分子材料的单体;在...

22865-62-94-Methylsulfinylanil...
化合物问答

什么是1-(2-FLUOROPHENYL)-5-METHYL-1H-PYRAZOLE-4-CARBOHYDRAZIDE(CAS号:618092-58-3)?

1-(2-氟苯基)-5-甲基-1H-吡唑-4-亚甲基肼是一种有机化合物,其分子式为C9H9FN3O。该化合物具有特定的物理化学性质,如熔点、沸点等,但具体值需查...

618092-58-31-(2-Fluorophenyl)-5...
化合物问答

Dauricumine(CAS号:345641-00-1)通常如何合成?

Dauricumine通常通过复杂的合成路线制备,涉及多个步骤,包括环化、氧化、卤化等反应。合成过程中使用了多种催化剂和试剂,例如金属催化剂、氧化剂等。产率通常...

345641-00-1(1R,1'S,5R,6'S,8'S)-...
化合物问答

5-氰基苯酞(CAS号:82104-74-3)安全吗?

5-氰基苯酞在正常使用条件下相对安全,但其具有一定的毒性,需谨慎操作。在实验或工业应用中,应采取适当的防护措施,如佩戴防护手套、护目镜和实验服,确保通风良好。误...

82104-74-31-Oxo-1,3-dihydro-2-...
化合物问答

2-Methyl-1-(phenylsulfonyl)-1H-pyrrolo[2,3-b]pyridin-5-amine(CAS号:1186502-59-9)安全吗?

该化合物在使用时需要谨慎操作。虽然其毒性和健康风险尚未完全明确,但建议在通风良好的环境中操作,并穿戴适当的个人防护装备,如手套和防护眼镜。

1186502-59-92-Methyl-1-(phenylsu...

来源期刊

Physical Chemistry Chemical Physics

Physical Chemistry Chemical Physics
CiteScore: 5.5
自引率: 10.3%
年发文量: 3036

Physical Chemistry Chemical Physics (PCCP) is an international journal co-owned by 19 physical chemistry and physics societies from around the world. This journal publishes original, cutting-edge research in physical chemistry, chemical physics and biophysical chemistry. To be suitable for publication in PCCP, articles must include significant innovation and/or insight into physical chemistry; this is the most important criterion that reviewers and Editors will judge against when evaluating submissions. The journal has a broad scope and welcomes contributions spanning experiment, theory, computation and data science. Topical coverage includes spectroscopy, dynamics, kinetics, statistical mechanics, thermodynamics, electrochemistry, catalysis, surface science, quantum mechanics, quantum computing and machine learning. Interdisciplinary research areas such as polymers and soft matter, materials, nanoscience, energy, surfaces/interfaces, and biophysical chemistry are welcomed if they demonstrate significant innovation and/or insight into physical chemistry. Joined experimental/theoretical studies are particularly appreciated when complementary and based on up-to-date approaches.

推荐化合物

推荐供应商

免责声明
本页面提供的学术期刊信息仅供参考和研究使用。我们与任何期刊出版商均无关联,也不处理投稿事宜。如有投稿相关咨询,请直接联系相关期刊出版商。
如发现页面信息有误,请发送邮件至 support@chemtradehub.com 联系我们。我们将及时核实并处理您的问题。